The 2.0 version of rSNPBase

Variant report

Variant rs58359565
Chromosome Location chr2:53958919-53958920
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:53908600-53982200 Weak transcription Small Intestine intestine
2 chr2:53910000-53994000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr2:53910200-53990600 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr2:53918400-53994000 Weak transcription Fetal Heart heart
5 chr2:53925400-53979400 Weak transcription Psoas Muscle Psoas
6 chr2:53927600-53960200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr2:53936600-53968400 Weak transcription Pancreas Pancrea
8 chr2:53936600-53978600 Weak transcription Hela-S3 cervix
9 chr2:53936800-53985400 Weak transcription Stomach Smooth Muscle stomach
10 chr2:53937000-53983800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr2:53937000-53994400 Weak transcription Placenta Amnion Placenta Amnion
12 chr2:53937200-53961400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr2:53937200-53964400 Weak transcription Aorta Aorta
14 chr2:53937200-53966800 Weak transcription Gastric stomach
15 chr2:53937200-53978600 Weak transcription NH-A brain
16 chr2:53937200-53983600 Weak transcription Right Ventricle heart
17 chr2:53937200-53994200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr2:53937400-53964000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr2:53937400-53979600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr2:53937400-53990200 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr2:53937400-53994400 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr2:53937600-53961600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr2:53938000-53961400 Weak transcription NHEK skin
24 chr2:53938000-53974800 Weak transcription H1 Cell Line embryonic stem cell
25 chr2:53938000-53974800 Weak transcription Placenta Placenta
26 chr2:53938200-53967000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr2:53938200-53975200 Weak transcription Duodenum Mucosa Duodenum
28 chr2:53938400-53963600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr2:53938400-53969400 Weak transcription Rectal Smooth Muscle rectum
30 chr2:53938400-53969600 Weak transcription Esophagus oesophagus
31 chr2:53938400-53975000 Weak transcription Fetal Kidney kidney
32 chr2:53938400-53982800 Weak transcription HUES48 Cell Line embryonic stem cell
33 chr2:53938400-53983400 Weak transcription HSMMtube muscle
34 chr2:53938400-53992400 Weak transcription K562 blood
35 chr2:53938600-53961000 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr2:53938600-53972000 Weak transcription HSMM muscle
37 chr2:53941800-53974400 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr2:53941800-53976400 Weak transcription Colon Smooth Muscle Colon
39 chr2:53943800-53960600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr2:53943800-53974800 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr2:53943800-53983600 Weak transcription Ovary ovary
42 chr2:53943800-53983600 Weak transcription Thymus Thymus
43 chr2:53943800-53983800 Weak transcription Left Ventricle heart
44 chr2:53944000-53960200 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr2:53944000-53974600 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr2:53945800-53968400 Weak transcription Brain Anterior Caudate brain
47 chr2:53949800-53974200 Weak transcription HUES64 Cell Line embryonic stem cell
48 chr2:53952200-53978600 Weak transcription Osteobl bone
49 chr2:53952400-53983600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr2:53952600-53974800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015