Variant report

Variant	rs17040755
Chromosome Location	chr4:110613229-110613230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110611889..110614128-chr4:110622707..110624451,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC109B-1	chr4:110613160-110613859	ENSG00000273447.1

Variant related genes	Relation type
ENSG00000138794	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17040619	1.00[AMR][1000 genomes]
rs36038539	1.00[AMR][1000 genomes]
rs5030544	1.00[AMR][1000 genomes]
rs5030579	1.00[AMR][1000 genomes]
rs5030585	1.00[AMR][1000 genomes]
rs7441380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv595142	chr4:110609481-110656730	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110572600-110623200	Weak transcription	Esophagus	oesophagus
2	chr4:110589600-110623200	Weak transcription	Brain Substantia Nigra	brain
3	chr4:110598800-110622800	Weak transcription	NHEK	skin
4	chr4:110600800-110622600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:110601200-110615800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr4:110601600-110613400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:110601800-110622800	Weak transcription	Right Atrium	heart
8	chr4:110602600-110620000	Weak transcription	Small Intestine	intestine
9	chr4:110604200-110613400	Weak transcription	Osteobl	bone
10	chr4:110604200-110613800	Weak transcription	Right Ventricle	heart
11	chr4:110605000-110622800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:110605200-110619800	Strong transcription	Dnd41	blood
13	chr4:110605400-110616000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr4:110605600-110616000	Strong transcription	Primary hematopoietic stem cells	blood
15	chr4:110605600-110619800	Strong transcription	Fetal Thymus	thymus
16	chr4:110605600-110622800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:110605800-110619400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:110605800-110622800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:110606000-110616000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:110606400-110622800	Weak transcription	Hela-S3	cervix
21	chr4:110607200-110622800	Weak transcription	Fetal Brain Male	brain
22	chr4:110607400-110618600	Strong transcription	Fetal Intestine Small	intestine
23	chr4:110607600-110619000	Strong transcription	Fetal Intestine Large	intestine
24	chr4:110607800-110623200	Weak transcription	Brain Angular Gyrus	brain
25	chr4:110608200-110617800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:110608400-110616000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:110608400-110618800	Strong transcription	Duodenum Mucosa	Duodenum
28	chr4:110608600-110619400	Strong transcription	Liver	Liver
29	chr4:110608800-110613400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:110608800-110619200	Strong transcription	Adipose Nuclei	Adipose
31	chr4:110609000-110615800	Strong transcription	HUVEC	blood vessel
32	chr4:110609000-110616200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr4:110609000-110622800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:110609200-110615200	Weak transcription	Stomach Mucosa	stomach
35	chr4:110609200-110616000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr4:110609600-110623000	Weak transcription	A549	lung
37	chr4:110609800-110619600	Weak transcription	HepG2	liver
38	chr4:110609800-110623200	Weak transcription	Psoas Muscle	Psoas
39	chr4:110610000-110619400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:110610200-110614400	Strong transcription	Left Ventricle	heart
41	chr4:110610200-110616200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:110610200-110617200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:110610200-110617200	Strong transcription	Fetal Stomach	stomach
44	chr4:110610200-110617400	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr4:110610200-110619400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr4:110610200-110619400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr4:110610200-110619400	Strong transcription	Fetal Muscle Leg	muscle
48	chr4:110610400-110614800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:110610400-110616000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr4:110610400-110618800	Strong transcription	Rectal Mucosa Donor 31	rectum

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