Variant report

Variant	rs36038539
Chromosome Location	chr4:110787322-110787323
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11568839	1.00[AMR][1000 genomes]
rs11568844	1.00[AMR][1000 genomes]
rs11568860	1.00[AMR][1000 genomes]
rs11568865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569085	1.00[AMR][1000 genomes]
rs17040755	1.00[AMR][1000 genomes]
rs5030544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5030579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5030585	1.00[AMR][1000 genomes]
rs7441380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110786000-110791000	Weak transcription	Primary T cells from cord blood	blood
3	chr4:110786200-110796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:110786400-110790600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:110786600-110791200	Weak transcription	Lung	lung
6	chr4:110787200-110790800	Weak transcription	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links