Variant report

Variant	rs11568844
Chromosome Location	chr4:110833681-110833682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:110833667-110834430	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110621463..110624410-chr4:110832783..110835223,2	K562	blood:

Variant related genes	Relation type
EGF	TF binding region
ENSG00000138794	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11568839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568865	1.00[AMR][1000 genomes]
rs11568882	1.00[AMR][1000 genomes]
rs11568897	1.00[AMR][1000 genomes]
rs11568944	1.00[AMR][1000 genomes]
rs11568989	1.00[AMR][1000 genomes]
rs11569006	1.00[AMR][1000 genomes]
rs11569007	1.00[AMR][1000 genomes]
rs11569016	1.00[AMR][1000 genomes]
rs11569026	1.00[AMR][1000 genomes]
rs11569030	1.00[AMR][1000 genomes]
rs11569032	1.00[AMR][1000 genomes]
rs11569085	1.00[AMR][1000 genomes]
rs36038539	1.00[AMR][1000 genomes]
rs7441380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110825000-110834000	Weak transcription	Psoas Muscle	Psoas
2	chr4:110830400-110833800	Weak transcription	Fetal Lung	lung
3	chr4:110831600-110834000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:110832800-110834200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:110832800-110836200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:110833200-110833800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:110833200-110834000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:110833200-110834000	Enhancers	Fetal Intestine Large	intestine
9	chr4:110833400-110833800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:110833400-110833800	Enhancers	Right Atrium	heart
11	chr4:110833400-110833800	Enhancers	NH-A	brain
12	chr4:110833400-110834000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:110833400-110834200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:110833400-110834200	Enhancers	Fetal Heart	heart
15	chr4:110833400-110834600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:110833400-110835600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr4:110833600-110833800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:110833600-110833800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:110833600-110833800	Enhancers	Colon Smooth Muscle	Colon
20	chr4:110833600-110833800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr4:110833600-110833800	Enhancers	Hela-S3	cervix
22	chr4:110833600-110833800	Enhancers	HSMMtube	muscle
23	chr4:110833600-110834000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:110833600-110834000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr4:110833600-110834000	Enhancers	Primary hematopoietic stem cells	blood
26	chr4:110833600-110834200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr4:110833600-110834400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:110833600-110834800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr4:110833600-110834800	Flanking Active TSS	K562	blood
30	chr4:110833600-110835200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr4:110833600-110835400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:110833600-110836000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr4:110833600-110838000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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