Variant report

Variant	rs11568989
Chromosome Location	chr4:110895258-110895259
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:110894301-110895282	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110888945..110892290-chr4:110892815..110895828,3	MCF-7	breast:

Variant related genes	Relation type
EGF	TF binding region
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11568839	1.00[AMR][1000 genomes]
rs11568844	1.00[AMR][1000 genomes]
rs11568860	1.00[AMR][1000 genomes]
rs11568865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569085	1.00[AMR][1000 genomes]
rs36038539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
3	chr4:110885800-110897200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
5	chr4:110890400-110900800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:110891200-110900000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:110891600-110895400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:110891600-110896400	Weak transcription	Spleen	Spleen
9	chr4:110891800-110900000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:110893800-110909600	Weak transcription	Fetal Heart	heart
11	chr4:110894000-110895600	Enhancers	Fetal Intestine Large	intestine
12	chr4:110894800-110895800	Enhancers	HepG2	liver
13	chr4:110894800-110896000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:110894800-110900000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:110894800-110900800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:110895000-110899600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:110895000-110899600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:110895000-110899600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:110895000-110900000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:110895000-110900800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:110895000-110909600	Weak transcription	Fetal Intestine Small	intestine
22	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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