Variant report

Variant	rs11568865
Chromosome Location	chr4:110850476-110850477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11568839	1.00[AMR][1000 genomes]
rs11568844	1.00[AMR][1000 genomes]
rs11568860	1.00[AMR][1000 genomes]
rs11568882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11569085	1.00[AMR][1000 genomes]
rs36038539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7441380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv1813951	chr4:110840748-110862637	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110843000-110876200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:110843200-110851000	Weak transcription	Pancreas	Pancrea
3	chr4:110849000-110850600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:110849000-110851600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:110849200-110850600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:110849200-110850800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:110849200-110851000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:110849200-110851600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:110849400-110850600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr4:110849400-110851400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:110849400-110853000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr4:110849600-110850800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:110849800-110850600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:110849800-110851000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:110850000-110852400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:110850200-110850800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr4:110850200-110850800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:110850400-110850800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:110850400-110852000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:110850400-110853000	Weak transcription	Psoas Muscle	Psoas

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