Variant report

Variant	rs17041364
Chromosome Location	chr2:30944632-30944633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12052219	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs12986790	0.86[CHB][hapmap]
rs1967561	0.81[CHB][hapmap]
rs2011965	0.89[ASN][1000 genomes]
rs2253464	0.81[CHB][hapmap]
rs2280404	0.85[MEX][hapmap]
rs2593437	0.81[CEU][hapmap]
rs2609942	0.91[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs2681686	0.86[EUR][1000 genomes]
rs2681687	0.86[EUR][1000 genomes]
rs2946928	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35481680	0.83[ASN][1000 genomes]
rs7601114	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30938400-30946000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:30940600-30969600	Weak transcription	Stomach Mucosa	stomach
4	chr2:30943000-30951400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr2:30944000-30945800	Enhancers	Fetal Intestine Small	intestine
6	chr2:30944200-30945600	Enhancers	Liver	Liver
7	chr2:30944400-30945200	Enhancers	HepG2	liver
8	chr2:30944400-30945400	Enhancers	Fetal Intestine Large	intestine
9	chr2:30944600-30945400	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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