Variant report

Variant	rs2681687
Chromosome Location	chr2:30926706-30926707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12052219	0.82[CHB][hapmap]
rs12618680	0.84[AMR][1000 genomes]
rs12986790	1.00[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13021296	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17041364	0.86[EUR][1000 genomes]
rs2011965	0.81[AMR][1000 genomes]
rs2609942	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2681686	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2946928	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4346433	0.83[ASN][1000 genomes]
rs4952177	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7601114	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2681687	LCLAT1	cis	parietal	SCAN
rs2681687	KHK	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30925400-30926800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr2:30925400-30927200	Weak transcription	Fetal Heart	heart
4	chr2:30925600-30926800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr2:30926400-30927200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:30926400-30927400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr2:30926600-30935800	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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