Variant report

Variant	rs12618680
Chromosome Location	chr2:30933521-30933522
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12052219	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12986790	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13021296	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2011965	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2609942	0.81[AMR][1000 genomes]
rs2681686	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2681687	0.84[AMR][1000 genomes]
rs35481680	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4346433	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4952177	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7599134	0.94[EUR][1000 genomes]
rs7601114	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30926600-30935800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:30926800-30934800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:30930000-30934200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:30930000-30934400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:30930000-30936800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr2:30930000-30936800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:30930000-30936800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:30930000-30936800	Weak transcription	Osteobl	bone
10	chr2:30932000-30937200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:30932200-30934600	Weak transcription	Lung	lung
12	chr2:30932200-30937600	Weak transcription	NHDF-Ad	bronchial
13	chr2:30933200-30936800	Weak transcription	Fetal Heart	heart
14	chr2:30933400-30934400	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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