Variant report

Variant	rs7599134
Chromosome Location	chr2:30927012-30927013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12052219	0.90[CEU][hapmap]
rs12618680	0.94[EUR][1000 genomes]
rs12986790	1.00[CEU][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs13021296	0.97[EUR][1000 genomes]
rs2011965	0.86[EUR][1000 genomes]
rs4346433	0.87[EUR][1000 genomes]
rs4952177	0.97[EUR][1000 genomes]
rs7601114	1.00[CEU][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7599134	ZNF175	trans	cerebellum	SCAN
rs7599134	CAD	cis	parietal	SCAN
rs7599134	MRPL33	cis	cerebellum	SCAN
rs7599134	LCLAT1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30925400-30927200	Weak transcription	Fetal Heart	heart
3	chr2:30926400-30927200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:30926400-30927400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr2:30926600-30935800	Weak transcription	Primary B cells from cord blood	blood
6	chr2:30926800-30934800	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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