Variant report

Variant	rs17041527
Chromosome Location	chr4:111166616-111166617
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:111163585..111167335-chr4:111167729..111171611,4	K562	blood:
2	chr4:111157478..111159904-chr4:111165030..111166728,2	K562	blood:
3	chr4:111165408..111167827-chr4:111197084..111199276,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10013061	0.86[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11735814	1.00[CEU][hapmap];0.88[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2054619	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35094386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4591675	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6533506	0.91[CEU][hapmap]
rs7672003	0.85[CEU][hapmap]
rs9997677	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111166000-111167000	Enhancers	K562	blood
2	chr4:111166200-111167000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:111166200-111167200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:111166200-111167200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:111166400-111166800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:111166400-111167000	Enhancers	Hela-S3	cervix
7	chr4:111166400-111167200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:111166600-111166800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:111166600-111166800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:111166600-111166800	Enhancers	NHEK	skin
11	chr4:111166600-111167000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:111166600-111167000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:111166600-111167000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:111166600-111167000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:111166600-111167000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:111166600-111167000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:111166600-111167000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:111166600-111167000	Enhancers	Fetal Kidney	kidney
19	chr4:111166600-111167000	Enhancers	HSMM	muscle
20	chr4:111166600-111167000	Bivalent Enhancer	NHDF-Ad	bronchial
21	chr4:111166600-111167000	Flanking Active TSS	Osteobl	bone
22	chr4:111166600-111167200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr4:111166600-111167200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:111166600-111167200	Enhancers	NH-A	brain

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