Variant report

Variant	rs7672003
Chromosome Location	chr4:111177791-111177792
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10013061	0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11735814	0.87[CEU][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17041527	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2054619	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2713949	0.91[JPT][hapmap]
rs35094386	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4591675	0.93[CEU][hapmap];0.89[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533506	0.93[CEU][hapmap];0.90[JPT][hapmap]
rs9997677	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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