Variant report

Variant	rs17041836
Chromosome Location	chr2:21382446-21382447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10495714	0.85[AFR][1000 genomes]
rs1607222	0.83[AFR][1000 genomes]
rs17041802	0.85[AFR][1000 genomes]
rs4603791	0.85[AFR][1000 genomes]
rs55702370	0.85[AFR][1000 genomes]
rs56145102	0.82[AFR][1000 genomes]
rs57364891	0.83[AFR][1000 genomes]
rs57481416	0.82[AFR][1000 genomes]
rs58108919	0.85[AFR][1000 genomes]
rs6751883	0.85[AFR][1000 genomes]
rs73920455	0.84[AFR][1000 genomes]
rs73920456	0.85[AFR][1000 genomes]
rs73920459	0.84[AFR][1000 genomes]
rs73920460	0.85[AFR][1000 genomes]
rs73920461	0.85[AFR][1000 genomes]
rs73920491	0.85[AFR][1000 genomes]
rs73920492	0.87[AFR][1000 genomes]
rs73920496	0.98[AFR][1000 genomes]
rs73920534	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21380400-21382600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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