Variant report

Variant	rs57364891
Chromosome Location	chr2:21328307-21328308
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10495714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1568183	0.87[AMR][1000 genomes]
rs1607222	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17041802	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17041836	0.83[AFR][1000 genomes]
rs4603791	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55702370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56145102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57481416	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58108919	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6738706	0.83[AFR][1000 genomes]
rs6751883	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920455	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73920456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920460	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920491	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920492	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920496	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920533	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73920534	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21326400-21328600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:21327600-21330000	Weak transcription	HepG2	liver
3	chr2:21327800-21328400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:21328200-21330000	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links