Variant report
| Variant | rs17043710 |
|---|---|
| Chromosome Location | chr2:115639420-115639421 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10184668 | 1.00[EUR][1000 genomes] |
| rs11886858 | 1.00[EUR][1000 genomes] |
| rs11891418 | 1.00[EUR][1000 genomes] |
| rs11898533 | 1.00[EUR][1000 genomes] |
| rs11902706 | 1.00[EUR][1000 genomes] |
| rs17043595 | 1.00[EUR][1000 genomes] |
| rs17043604 | 1.00[EUR][1000 genomes] |
| rs17043612 | 1.00[EUR][1000 genomes] |
| rs17043672 | 1.00[EUR][1000 genomes] |
| rs17043695 | 1.00[AMR][1000 genomes] |
| rs58970492 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60354042 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60894360 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72832432 | 0.92[AFR][1000 genomes] |
| rs72959590 | 1.00[EUR][1000 genomes] |
| rs72959598 | 1.00[EUR][1000 genomes] |
| rs72959602 | 1.00[EUR][1000 genomes] |
| rs72961604 | 1.00[EUR][1000 genomes] |
| rs7589566 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874916 | chr2:115589606-115647583 | Weak transcription Active TSS Enhancers | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 2 | esv1797447 | chr2:115627410-115647583 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | n/a |
| 3 | nsv582731 | chr2:115628127-115639446 | Weak transcription Enhancers | lncRNA | n/a | inside rSNPs | n/a |
| 4 | esv1802776 | chr2:115628127-115647583 | Weak transcription Enhancers | lncRNA | n/a | inside rSNPs | n/a |
| 5 | esv1793717 | chr2:115628127-115653251 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:115639000-115640600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
