Variant report

Variant	rs60894360
Chromosome Location	chr2:115621141-115621142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10184668	1.00[EUR][1000 genomes]
rs11886858	1.00[EUR][1000 genomes]
rs11891418	1.00[EUR][1000 genomes]
rs11898533	1.00[EUR][1000 genomes]
rs11902706	1.00[EUR][1000 genomes]
rs17043595	1.00[EUR][1000 genomes]
rs17043604	1.00[EUR][1000 genomes]
rs17043612	1.00[EUR][1000 genomes]
rs17043672	1.00[EUR][1000 genomes]
rs17043695	1.00[AMR][1000 genomes]
rs17043710	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58970492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60354042	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72832432	1.00[AFR][1000 genomes]
rs72959590	1.00[EUR][1000 genomes]
rs72959598	1.00[EUR][1000 genomes]
rs72959602	1.00[EUR][1000 genomes]
rs72961604	1.00[EUR][1000 genomes]
rs7589566	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874916	chr2:115589606-115647583	Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115618800-115623200	Weak transcription	Fetal Brain Female	brain
2	chr2:115620800-115623000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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