Variant report

Variant	rs17044015
Chromosome Location	chr1:217000074-217000075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11117688	1.00[CHB][hapmap]
rs17041521	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043988	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17044015	ESRRG	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
2	chr1:216989600-217000600	Weak transcription	Psoas Muscle	Psoas
3	chr1:216994600-217004000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:216996400-217000400	Enhancers	Fetal Intestine Small	intestine
5	chr1:216996400-217004400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:216998600-217004000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:216999200-217003800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:216999200-217003800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:216999400-217000200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:216999400-217003200	Weak transcription	Fetal Heart	heart
11	chr1:216999600-217000600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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