Variant report

Variant	rs11117688
Chromosome Location	chr1:216998613-216998614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11117683	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11572551	1.00[CEU][hapmap]
rs12086610	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17041521	1.00[CHB][hapmap]
rs17043988	1.00[CHB][hapmap]
rs17044015	1.00[CHB][hapmap]
rs17649784	1.00[EUR][1000 genomes]
rs17649955	1.00[EUR][1000 genomes]
rs17650566	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3738490	0.82[YRI][hapmap]
rs55650528	0.96[EUR][1000 genomes]
rs55703041	0.87[EUR][1000 genomes]
rs61817870	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
2	chr1:216989600-217000600	Weak transcription	Psoas Muscle	Psoas
3	chr1:216994600-217004000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:216996400-217000400	Enhancers	Fetal Intestine Small	intestine
5	chr1:216996400-217004400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:216997000-216999600	Enhancers	Fetal Intestine Large	intestine
7	chr1:216997800-216999400	Enhancers	Duodenum Mucosa	Duodenum
8	chr1:216998000-216999200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:216998000-216999200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:216998200-216998800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:216998400-216999000	Weak transcription	Small Intestine	intestine
12	chr1:216998600-216999400	Enhancers	Fetal Heart	heart
13	chr1:216998600-217004000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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