Variant report

Variant	rs55703041
Chromosome Location	chr1:216979870-216979871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11117683	1.00[EUR][1000 genomes]
rs11117688	0.87[EUR][1000 genomes]
rs12086610	0.87[EUR][1000 genomes]
rs17649784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17649955	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17650566	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55650528	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61817870	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216977200-216980000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:216977200-216980200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:216977400-216980200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:216978600-216980200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:216978600-216980400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:216979000-216980400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:216979000-216980400	Weak transcription	HSMMtube	muscle
8	chr1:216979000-216980600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:216979000-216986200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:216979200-216980200	Enhancers	Brain Germinal Matrix	brain
11	chr1:216979400-216980400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:216979400-216980600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:216979400-216983000	Weak transcription	Psoas Muscle	Psoas
14	chr1:216979600-216983200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:216979800-216985000	Weak transcription	Fetal Heart	heart
16	chr1:216979800-216985200	Weak transcription	Brain Substantia Nigra	brain
17	chr1:216979800-216988800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:216979800-216989000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links