Variant report

Variant	rs17650566
Chromosome Location	chr1:217003566-217003567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11117683	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11117688	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11572505	1.00[YRI][hapmap]
rs11572506	1.00[YRI][hapmap]
rs11572551	1.00[CEU][hapmap]
rs11572693	1.00[ASW][hapmap]
rs12075743	1.00[ASW][hapmap]
rs12086610	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17631197	1.00[ASW][hapmap]
rs17649784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17649955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55650528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55703041	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61817870	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
2	chr1:216994600-217004000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:216996400-217004400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:216998600-217004000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:216999200-217003800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:216999200-217003800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:217000400-217003600	Weak transcription	Fetal Intestine Small	intestine
8	chr1:217001400-217003600	Weak transcription	Fetal Intestine Large	intestine
9	chr1:217003200-217007200	Enhancers	Fetal Heart	heart
10	chr1:217003400-217004400	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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