Variant report

Variant	rs17046008
Chromosome Location	chr4:166059754-166059755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166057805..166060502-chr4:166299440..166301033,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10000910	0.81[EUR][1000 genomes]
rs10011081	1.00[CHB][hapmap]
rs10014286	0.80[EUR][1000 genomes]
rs10212911	1.00[ASN][1000 genomes]
rs10213136	1.00[ASN][1000 genomes]
rs10213422	1.00[ASN][1000 genomes]
rs11944355	1.00[ASN][1000 genomes]
rs17046025	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17046040	1.00[CHB][hapmap]
rs17046047	1.00[CHB][hapmap]
rs17172935	1.00[CEU][hapmap]
rs28408505	0.80[EUR][1000 genomes]
rs28415222	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34402371	1.00[ASN][1000 genomes]
rs4234890	0.96[ASN][1000 genomes]
rs4234891	0.96[ASN][1000 genomes]
rs4691165	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57425440	0.96[ASN][1000 genomes]
rs59951611	0.80[EUR][1000 genomes]
rs60474827	0.88[EUR][1000 genomes]
rs66548753	1.00[ASN][1000 genomes]
rs67185057	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67230009	1.00[ASN][1000 genomes]
rs6821879	0.80[EUR][1000 genomes]
rs6827676	0.96[ASN][1000 genomes]
rs6844945	0.80[EUR][1000 genomes]
rs6850576	1.00[CHB][hapmap]
rs6850775	1.00[CHB][hapmap]
rs7680096	1.00[CHB][hapmap]
rs7683597	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9308098	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166059600-166060200	Weak transcription	Liver	Liver

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