Variant report

Variant	rs9308098
Chromosome Location	chr4:166080237-166080238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10014286	0.89[GIH][hapmap];0.89[MEX][hapmap]
rs10212911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212912	0.94[AFR][1000 genomes]
rs10213136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213425	0.94[AFR][1000 genomes]
rs11944355	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498886	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12510196	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13104209	0.87[EUR][1000 genomes]
rs13110539	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13111944	0.89[EUR][1000 genomes]
rs13112394	0.89[EUR][1000 genomes]
rs13112537	0.89[EUR][1000 genomes]
rs13112566	0.89[EUR][1000 genomes]
rs13112952	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13119189	0.90[EUR][1000 genomes]
rs13122501	0.80[EUR][1000 genomes]
rs13122587	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13122965	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13123095	0.80[EUR][1000 genomes]
rs13126727	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13126978	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13128755	0.86[EUR][1000 genomes]
rs13128780	0.87[EUR][1000 genomes]
rs13133837	0.81[AMR][1000 genomes]
rs13136080	0.90[EUR][1000 genomes]
rs13137292	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13146247	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13149658	1.00[JPT][hapmap];0.83[MEX][hapmap];0.80[EUR][1000 genomes]
rs17046008	1.00[ASN][1000 genomes]
rs17585174	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs2067044	0.92[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs28409460	0.82[EUR][1000 genomes]
rs28412902	0.95[AFR][1000 genomes]
rs28477276	0.94[AFR][1000 genomes]
rs28569144	0.94[AFR][1000 genomes]
rs28608785	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34023011	0.90[EUR][1000 genomes]
rs34045034	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34051109	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34129863	0.90[EUR][1000 genomes]
rs34160322	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34164096	0.90[EUR][1000 genomes]
rs34206311	0.90[EUR][1000 genomes]
rs34258309	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34284687	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34316562	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34358664	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34402371	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34409952	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34471047	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34718907	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34745207	0.90[EUR][1000 genomes]
rs34764855	0.90[EUR][1000 genomes]
rs34900903	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34982093	0.90[EUR][1000 genomes]
rs34995648	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35106888	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35171672	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35201973	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35209497	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35221561	0.90[EUR][1000 genomes]
rs35255096	0.80[EUR][1000 genomes]
rs35309983	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35350084	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35358450	0.81[AMR][1000 genomes]
rs35397148	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35559393	0.86[EUR][1000 genomes]
rs35614407	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35704070	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35742826	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35800737	0.90[EUR][1000 genomes]
rs35815424	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35926451	0.90[EUR][1000 genomes]
rs35931379	0.98[EUR][1000 genomes]
rs35934050	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35936785	0.98[EUR][1000 genomes]
rs35937012	0.90[EUR][1000 genomes]
rs36014884	0.90[EUR][1000 genomes]
rs36061152	0.90[EUR][1000 genomes]
rs36065861	0.88[EUR][1000 genomes]
rs36087611	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36101463	0.80[EUR][1000 genomes]
rs4132378	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41530947	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4234890	0.81[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4234891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691153	1.00[JPT][hapmap]
rs4691161	1.00[JPT][hapmap]
rs4691164	1.00[JPT][hapmap]
rs4691165	1.00[ASN][1000 genomes]
rs4691166	0.90[EUR][1000 genomes]
rs4691167	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4691168	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4691170	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55683737	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56197253	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57425440	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62352255	0.90[EUR][1000 genomes]
rs66512955	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66516986	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66548753	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66824958	0.90[EUR][1000 genomes]
rs66832370	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66914762	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67055719	0.80[EUR][1000 genomes]
rs67230009	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67304281	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67484468	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67688653	0.80[EUR][1000 genomes]
rs67776571	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67786105	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68011503	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68050566	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68102468	0.90[EUR][1000 genomes]
rs68191502	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6827676	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6844945	0.87[GIH][hapmap];0.84[MEX][hapmap]
rs71618438	0.90[EUR][1000 genomes]
rs71618439	0.90[EUR][1000 genomes]
rs71618440	0.90[EUR][1000 genomes]
rs71618441	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72699537	0.90[EUR][1000 genomes]
rs72699542	0.83[EUR][1000 genomes]
rs72699544	0.90[EUR][1000 genomes]
rs72699546	0.90[EUR][1000 genomes]
rs72699548	0.90[EUR][1000 genomes]
rs72699558	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72699560	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7656134	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7679723	0.94[AFR][1000 genomes]
rs7680096	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166076800-166080400	Enhancers	HepG2	liver
2	chr4:166079600-166080600	Flanking Active TSS	Liver	Liver

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