The 2.0 version of rSNPBase

Variant report

Variant rs17047300
Chromosome Location chr2:56112168-56112169
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:56089200-56112200 Weak transcription Pancreas Pancrea
2 chr2:56092800-56112400 Weak transcription Stomach Smooth Muscle stomach
3 chr2:56092800-56114400 Weak transcription Brain Cingulate Gyrus brain
4 chr2:56094800-56116200 Weak transcription Spleen Spleen
5 chr2:56104600-56115000 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr2:56105000-56112600 Weak transcription HSMMtube muscle
7 chr2:56107600-56114400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr2:56107800-56116000 Weak transcription Placenta Amnion Placenta Amnion
9 chr2:56108200-56112800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr2:56108400-56114400 Weak transcription Brain Substantia Nigra brain
11 chr2:56108400-56115000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr2:56108400-56115200 Weak transcription Fetal Kidney kidney
13 chr2:56108400-56116000 Weak transcription Lung lung
14 chr2:56108600-56112800 Weak transcription Placenta Placenta
15 chr2:56108800-56115000 Weak transcription Gastric stomach
16 chr2:56108800-56116200 Weak transcription Brain Anterior Caudate brain
17 chr2:56109600-56115000 Enhancers Hela-S3 cervix
18 chr2:56109800-56114200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr2:56109800-56120000 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr2:56110000-56112400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr2:56110000-56112600 Genic enhancers Osteobl bone
22 chr2:56110000-56113000 Enhancers Ovary ovary
23 chr2:56110000-56117200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr2:56110200-56116600 Enhancers NH-A brain
25 chr2:56110400-56113600 Enhancers Adipose Nuclei Adipose
26 chr2:56110400-56116600 Enhancers Muscle Satellite Cultured Cells --
27 chr2:56110400-56116600 Enhancers NHLF lung
28 chr2:56110400-56116800 Enhancers NHDF-Ad bronchial
29 chr2:56110600-56112600 Genic enhancers Breast Myoepithelial Primary Cells Breast
30 chr2:56110600-56112600 Enhancers Aorta Aorta
31 chr2:56110600-56112800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
32 chr2:56111000-56112200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr2:56111000-56112200 Weak transcription HMEC breast
34 chr2:56111200-56112200 Weak transcription Primary monocytes fromperipheralblood blood
35 chr2:56111200-56112400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr2:56111200-56112600 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr2:56111200-56112800 Weak transcription Fetal Lung lung
38 chr2:56111200-56116000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr2:56111400-56112200 Weak transcription A549 lung
40 chr2:56111400-56113600 Enhancers Monocytes-CD14+_RO01746 blood
41 chr2:56111600-56112200 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:56111600-56112200 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr2:56111600-56112200 Strong transcription HSMM muscle
44 chr2:56111600-56113000 Enhancers Right Atrium heart
45 chr2:56111800-56113200 Genic enhancers NHEK skin
46 chr2:56112000-56116000 Genic enhancers HUVEC blood vessel

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Last update: Aug 31, 2015