Variant report

Variant	rs2082141
Chromosome Location	chr2:56051658-56051659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11903784	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1430201	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1594308	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17047243	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17047272	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17047300	0.86[AFR][1000 genomes]
rs34042197	0.88[AFR][1000 genomes]
rs57692404	0.93[AFR][1000 genomes]
rs58827055	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56048800-56051800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:56050400-56054400	Weak transcription	A549	lung
3	chr2:56051600-56052000	Flanking Active TSS	K562	blood
4	chr2:56051600-56053200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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