Variant report
| Variant | rs17047624 |
|---|---|
| Chromosome Location | chr3:68448375-68448376 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs17047585 | 0.86[EUR][1000 genomes] |
| rs17047586 | 0.86[EUR][1000 genomes] |
| rs17047599 | 0.87[CHB][hapmap];0.90[JPT][hapmap] |
| rs17047602 | 0.87[CHB][hapmap];0.90[JPT][hapmap] |
| rs17047626 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs72912926 | 0.87[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72912928 | 0.92[ASN][1000 genomes] |
| rs72912960 | 0.82[AFR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834721 | chr3:68365963-68526394 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv998582 | chr3:68422687-68461190 | Enhancers ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
