Variant report

Variant	rs17047640
Chromosome Location	chr3:68461156-68461157
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12637487	0.91[CHB][hapmap];0.89[JPT][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13069343	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13076798	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13082470	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17047647	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17047650	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17047665	0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17047673	0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17047690	0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17047692	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2136716	0.90[CHB][hapmap];0.88[JPT][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55768415	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59823273	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73109075	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73109077	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73109079	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73109080	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs994553	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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