Variant report

Variant	rs13069343
Chromosome Location	chr3:68475662-68475663
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12637487	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17047654	0.81[YRI][hapmap]
rs17047665	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17047668	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs17047673	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17047690	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17047692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136716	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55768415	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59823273	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73109075	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73109077	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73109079	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73109080	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68469800-68477400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68475000-68479400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:68475200-68477400	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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