Variant report
| Variant | rs17047654 |
|---|---|
| Chromosome Location | chr3:68465899-68465900 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10433502 | 0.82[YRI][hapmap] |
| rs11914870 | 0.82[YRI][hapmap] |
| rs13069343 | 0.81[YRI][hapmap] |
| rs1510363 | 0.83[YRI][hapmap] |
| rs17047633 | 0.89[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs17047668 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17047708 | 0.88[YRI][hapmap] |
| rs34067148 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34763509 | 0.89[ASN][1000 genomes] |
| rs35256017 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6549127 | 0.82[YRI][hapmap] |
| rs72914726 | 0.89[ASN][1000 genomes] |
| rs72914732 | 0.89[ASN][1000 genomes] |
| rs9683295 | 0.80[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834721 | chr3:68365963-68526394 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv1006007 | chr3:68451209-68474361 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv1001320 | chr3:68451209-68475128 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
