Variant report

Variant	rs17047668
Chromosome Location	chr3:68469033-68469034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10433502	0.87[YRI][hapmap]
rs11914870	0.87[YRI][hapmap]
rs13069343	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs1510363	0.87[YRI][hapmap]
rs17047654	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs17047708	0.87[YRI][hapmap]
rs34067148	0.84[EUR][1000 genomes]
rs35256017	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6549127	0.87[YRI][hapmap]
rs9683295	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68466800-68469200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:68467200-68470000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:68467200-68472400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:68468600-68469600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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