Variant report

Variant	rs17047679
Chromosome Location	chr3:68470062-68470063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17047670	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17047675	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17047725	1.00[YRI][hapmap]
rs28510934	1.00[AMR][1000 genomes]
rs6549123	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775916	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6790243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9836361	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68467200-68472400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:68469600-68470400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:68469800-68477400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:68470000-68470200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:68470000-68470400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:68470000-68470400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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