Variant report

Variant	rs17047725
Chromosome Location	chr3:68483400-68483401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1010749	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12106777	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1388498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1388499	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1491764	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs1510366	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510367	0.86[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17047635	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17047637	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17047651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17047670	1.00[YRI][hapmap]
rs17047675	1.00[YRI][hapmap]
rs17047679	1.00[YRI][hapmap]
rs17047687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17047694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2221758	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs262201	0.82[ASN][1000 genomes]
rs3749216	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4855328	1.00[CEU][hapmap]
rs4855330	1.00[CEU][hapmap]
rs6549119	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs6773412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6775916	1.00[YRI][hapmap]
rs6801229	1.00[CEU][hapmap]
rs72626995	0.82[ASN][1000 genomes]
rs72626996	0.95[EUR][1000 genomes]
rs72626997	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72627000	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72627001	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72628608	0.82[ASN][1000 genomes]
rs72628614	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72628615	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs952769	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs957894	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs9829000	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9859140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68477800-68487400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68482800-68483600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:68483200-68483600	Enhancers	Rectal Smooth Muscle	rectum

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