Variant report

Variant	rs17047687
Chromosome Location	chr3:68472762-68472763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1010749	1.00[CHB][hapmap]
rs12106777	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1388498	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1388499	1.00[CHB][hapmap]
rs1491764	0.88[CHB][hapmap]
rs1510366	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510367	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17047635	1.00[JPT][hapmap]
rs17047637	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17047651	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17047694	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17047725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2221758	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs262201	0.82[ASN][1000 genomes]
rs3749216	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6549119	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs6773412	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6801229	1.00[CEU][hapmap]
rs72626995	0.82[ASN][1000 genomes]
rs72626996	0.95[EUR][1000 genomes]
rs72626997	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72627000	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72627001	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72628608	0.82[ASN][1000 genomes]
rs72628614	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72628615	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs952769	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs957894	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9829000	1.00[CHB][hapmap]
rs9859140	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv1003779	chr3:68470899-68517125	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68469800-68477400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:68472400-68472800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:68472600-68472800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:68472600-68472800	Enhancers	HUES64 Cell Line	embryonic stem cell

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