Variant report

Variant	rs957894
Chromosome Location	chr3:68412448-68412449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1010749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs12106777	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1388498	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs1388499	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[EUR][1000 genomes]
rs1491764	1.00[CEU][hapmap]
rs1510367	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17047635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17047637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17047651	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs17047687	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs17047694	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs17047725	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs262201	0.90[ASN][1000 genomes]
rs3749216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4855328	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs4855330	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs6549119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6773412	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6801229	1.00[CEU][hapmap]
rs72626935	1.00[EUR][1000 genomes]
rs72626936	1.00[EUR][1000 genomes]
rs72626937	1.00[EUR][1000 genomes]
rs72626938	1.00[EUR][1000 genomes]
rs72626939	1.00[EUR][1000 genomes]
rs72626956	1.00[EUR][1000 genomes]
rs72626958	1.00[EUR][1000 genomes]
rs72626961	1.00[EUR][1000 genomes]
rs72626975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72626976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72626987	0.87[ASN][1000 genomes]
rs72626988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72626989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72626995	0.90[ASN][1000 genomes]
rs72626996	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72626997	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72627000	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72627001	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72628608	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72628614	0.85[ASN][1000 genomes]
rs72628615	0.83[ASN][1000 genomes]
rs952769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9829000	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs9859140	1.00[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590562	chr3:68393781-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv590563	chr3:68402933-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68411600-68413400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:68412400-68413600	Enhancers	Fetal Brain Male	brain

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