Variant report

Variant	rs72626995
Chromosome Location	chr3:68424228-68424229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12106777	1.00[ASN][1000 genomes]
rs1510366	0.82[ASN][1000 genomes]
rs1510367	0.82[ASN][1000 genomes]
rs17047687	0.82[ASN][1000 genomes]
rs17047694	0.82[ASN][1000 genomes]
rs17047725	0.82[ASN][1000 genomes]
rs2221758	0.82[ASN][1000 genomes]
rs262201	1.00[ASN][1000 genomes]
rs72626989	0.86[ASN][1000 genomes]
rs72626996	0.96[ASN][1000 genomes]
rs72626997	1.00[ASN][1000 genomes]
rs72627000	1.00[ASN][1000 genomes]
rs72627001	1.00[ASN][1000 genomes]
rs72628608	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72628614	0.94[ASN][1000 genomes]
rs72628615	0.92[ASN][1000 genomes]
rs957894	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv998582	chr3:68422687-68461190	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68423000-68424400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:68423200-68424600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr3:68423400-68424400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:68423600-68424600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:68423600-68426800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links