Variant report
| Variant | rs72626989 |
|---|---|
| Chromosome Location | chr3:68411685-68411686 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1010749 | 0.96[EUR][1000 genomes] |
| rs12106777 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1388498 | 1.00[EUR][1000 genomes] |
| rs1388499 | 0.96[EUR][1000 genomes] |
| rs262201 | 0.86[ASN][1000 genomes] |
| rs72626935 | 1.00[EUR][1000 genomes] |
| rs72626936 | 1.00[EUR][1000 genomes] |
| rs72626937 | 1.00[EUR][1000 genomes] |
| rs72626938 | 1.00[EUR][1000 genomes] |
| rs72626939 | 1.00[EUR][1000 genomes] |
| rs72626956 | 1.00[EUR][1000 genomes] |
| rs72626958 | 1.00[EUR][1000 genomes] |
| rs72626961 | 1.00[EUR][1000 genomes] |
| rs72626975 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72626976 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72626987 | 0.87[ASN][1000 genomes] |
| rs72626988 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72626995 | 0.86[ASN][1000 genomes] |
| rs72626996 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72626997 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72627000 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72627001 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72628608 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72628614 | 0.81[ASN][1000 genomes] |
| rs957894 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752014 | chr3:68091879-68416989 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv834721 | chr3:68365963-68526394 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv590562 | chr3:68393781-68422687 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv590563 | chr3:68402933-68422687 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:68411600-68413400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
