Variant report

Variant	rs1388499
Chromosome Location	chr3:68345787-68345788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:68344569..68347557-chr3:68353420..68355980,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1010749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491764	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs1510367	0.86[CHB][hapmap]
rs17047635	1.00[CEU][hapmap]
rs17047637	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs17047651	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17047687	1.00[CHB][hapmap]
rs17047694	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17047725	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3749216	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs4855328	1.00[CEU][hapmap]
rs4855330	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs6549119	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs6773412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6801229	1.00[CEU][hapmap]
rs72626935	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72626936	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72626937	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72626938	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72626939	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72626956	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72626958	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72626961	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72626975	0.96[EUR][1000 genomes]
rs72626976	0.96[EUR][1000 genomes]
rs72626988	0.96[EUR][1000 genomes]
rs72626989	0.96[EUR][1000 genomes]
rs72926568	0.99[AFR][1000 genomes]
rs9310020	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs952769	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs957894	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[EUR][1000 genomes]
rs9827769	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9829000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9859140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9864476	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68341200-68346200	Weak transcription	Aorta	Aorta

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