Variant report

Variant	rs9827769
Chromosome Location	chr3:68343665-68343666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1388497	1.00[EUR][1000 genomes]
rs1388499	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1491731	1.00[EUR][1000 genomes]
rs1491742	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6773412	1.00[YRI][hapmap]
rs72926568	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9310020	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs973890	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs973891	1.00[EUR][1000 genomes]
rs9829000	1.00[ASW][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs9859140	1.00[YRI][hapmap]
rs9864476	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68341200-68346200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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