Variant report

Variant	rs973890
Chromosome Location	chr3:68315341-68315342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1388497	1.00[EUR][1000 genomes]
rs1491731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1491742	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs72926568	1.00[EUR][1000 genomes]
rs73836836	1.00[AMR][1000 genomes]
rs9310020	1.00[EUR][1000 genomes]
rs973891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9827769	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs983962	1.00[MEX][hapmap]
rs9864476	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68314600-68315800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:68314600-68316200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:68314600-68316600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:68314800-68315800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:68315000-68315600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:68315000-68315800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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