Variant report
| Variant | rs6801229 |
|---|---|
| Chromosome Location | chr3:68385370-68385371 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:48)
| rs_ID | r2[population] |
|---|---|
| rs1010749 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12106777 | 0.86[AMR][1000 genomes] |
| rs1388498 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs1388499 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1491764 | 1.00[CEU][hapmap] |
| rs17047637 | 1.00[CEU][hapmap] |
| rs17047651 | 1.00[CEU][hapmap] |
| rs17047687 | 1.00[CEU][hapmap] |
| rs17047694 | 1.00[CEU][hapmap] |
| rs17047725 | 1.00[CEU][hapmap] |
| rs262236 | 0.86[ASN][1000 genomes] |
| rs262237 | 0.86[ASN][1000 genomes] |
| rs262238 | 0.86[ASN][1000 genomes] |
| rs262239 | 0.86[ASN][1000 genomes] |
| rs262240 | 0.86[ASN][1000 genomes] |
| rs262241 | 0.87[ASN][1000 genomes] |
| rs262242 | 0.87[ASN][1000 genomes] |
| rs262243 | 0.87[ASN][1000 genomes] |
| rs262244 | 0.87[ASN][1000 genomes] |
| rs3749216 | 1.00[CEU][hapmap] |
| rs4855328 | 1.00[CEU][hapmap] |
| rs4855330 | 1.00[CEU][hapmap] |
| rs63108 | 0.86[ASN][1000 genomes] |
| rs6549119 | 1.00[CEU][hapmap] |
| rs6773412 | 1.00[CEU][hapmap] |
| rs72626935 | 0.88[EUR][1000 genomes] |
| rs72626936 | 0.88[EUR][1000 genomes] |
| rs72626937 | 0.88[EUR][1000 genomes] |
| rs72626938 | 0.88[EUR][1000 genomes] |
| rs72626939 | 0.88[EUR][1000 genomes] |
| rs72626956 | 0.88[EUR][1000 genomes] |
| rs72626958 | 0.88[EUR][1000 genomes] |
| rs72626961 | 0.88[EUR][1000 genomes] |
| rs72626975 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72626976 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72626988 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72626989 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72626996 | 0.86[AMR][1000 genomes] |
| rs72626997 | 0.86[AMR][1000 genomes] |
| rs72627000 | 0.86[AMR][1000 genomes] |
| rs72627001 | 0.86[AMR][1000 genomes] |
| rs72628608 | 0.81[AMR][1000 genomes] |
| rs751500 | 1.00[CEU][hapmap] |
| rs7617495 | 0.80[ASN][1000 genomes] |
| rs952769 | 1.00[CEU][hapmap] |
| rs957894 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9829000 | 1.00[CEU][hapmap] |
| rs9859140 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752014 | chr3:68091879-68416989 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010992 | chr3:68353191-68388825 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv834721 | chr3:68365963-68526394 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
