Variant report

Variant	rs3749216
Chromosome Location	chr3:68466235-68466236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1010749	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12106777	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1388498	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1388499	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs1491764	1.00[CEU][hapmap]
rs1510366	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510367	0.85[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17047635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17047637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17047651	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17047687	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17047694	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17047725	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2221758	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs262201	0.86[ASN][1000 genomes]
rs4855328	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs4855330	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs6549119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6773412	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6801229	1.00[CEU][hapmap]
rs72626995	0.86[ASN][1000 genomes]
rs72626996	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72626997	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72627000	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72627001	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72628608	0.86[ASN][1000 genomes]
rs72628614	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72628615	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs952769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs957894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9829000	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs9859140	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1006007	chr3:68451209-68474361	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv1001320	chr3:68451209-68475128	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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