Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10172020	0.84[CHB][hapmap]
rs10175691	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10200604	0.92[CHB][hapmap]
rs11125625	0.83[ASN][1000 genomes]
rs11125626	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11886381	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs13021782	0.92[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17047851	0.92[CHB][hapmap]
rs17047854	0.92[CHB][hapmap]
rs17268785	0.92[CHB][hapmap]
rs4672106	0.84[CHB][hapmap]
rs4672110	0.92[CHB][hapmap]
rs62164393	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6545572	0.92[CHB][hapmap]
rs6545574	0.90[CHB][hapmap]
rs6704684	0.92[CHB][hapmap]
rs6714635	0.92[CHB][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6735003	0.92[CHB][hapmap]
rs6747380	0.92[CHB][hapmap]
rs6748308	0.92[CHB][hapmap]
rs6760269	0.92[CHB][hapmap]
rs7355411	0.84[CHB][hapmap]
rs7562381	0.92[CHB][hapmap]
rs7566597	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv582032	chr2:56551074-56599354	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56576000-56603000	Weak transcription	HSMM	muscle
2	chr2:56576000-56613200	Weak transcription	Left Ventricle	heart
3	chr2:56597000-56603800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:56597200-56599400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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