Variant report
Variant | rs6545574 |
---|---|
Chromosome Location | chr2:56590564-56590565 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:56584362..56587143-chr2:56589529..56592392,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10172020 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
rs10175691 | 0.89[CHB][hapmap];0.84[JPT][hapmap] |
rs10200604 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes] |
rs11886381 | 0.90[CHB][hapmap] |
rs11893331 | 0.86[EUR][1000 genomes] |
rs13021782 | 0.81[CHB][hapmap] |
rs17047851 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17047854 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17047856 | 0.90[CHB][hapmap] |
rs17268785 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4672106 | 0.89[CHB][hapmap] |
rs4672110 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes] |
rs56140649 | 0.85[EUR][1000 genomes] |
rs6545572 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes] |
rs6704684 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6714635 | 0.81[CHB][hapmap] |
rs6735003 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes] |
rs6747380 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6748308 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs6756427 | 0.93[EUR][1000 genomes] |
rs6760269 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs7355411 | 0.89[CHB][hapmap] |
rs7562381 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes] |
rs7566597 | 0.89[CHB][hapmap] |
rs7573049 | 0.87[EUR][1000 genomes] |
rs7602657 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530516 | chr2:56447922-56633505 | Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
2 | nsv874170 | chr2:56496589-56590865 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv834093 | chr2:56538097-56708677 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv1004449 | chr2:56538460-56715861 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv874171 | chr2:56545845-56727178 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv582032 | chr2:56551074-56599354 | Weak transcription Enhancers Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:56576000-56603000 | Weak transcription | HSMM | muscle |
2 | chr2:56576000-56613200 | Weak transcription | Left Ventricle | heart |