Variant report
| Variant | rs17049241 |
|---|---|
| Chromosome Location | chr2:58128937-58128938 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10176942 | 1.00[EUR][1000 genomes] |
| rs17049183 | 1.00[YRI][hapmap] |
| rs17049208 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17049249 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17049265 | 1.00[ASW][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17049267 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17049333 | 1.00[EUR][1000 genomes] |
| rs17049337 | 1.00[EUR][1000 genomes] |
| rs17049338 | 1.00[EUR][1000 genomes] |
| rs17049341 | 1.00[EUR][1000 genomes] |
| rs17049342 | 1.00[EUR][1000 genomes] |
| rs17049343 | 1.00[EUR][1000 genomes] |
| rs17049344 | 1.00[EUR][1000 genomes] |
| rs2030236 | 1.00[EUR][1000 genomes] |
| rs58678361 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60226794 | 1.00[EUR][1000 genomes] |
| rs60319384 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60590670 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72951065 | 1.00[EUR][1000 genomes] |
| rs72951066 | 1.00[EUR][1000 genomes] |
| rs72951082 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007118 | chr2:57562051-58147588 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv874196 | chr2:57946148-58220320 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1010981 | chr2:58013389-58205699 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv874199 | chr2:58031249-58161520 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv834159 | chr2:58101262-58283655 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:58128600-58129000 | Enhancers | Muscle Satellite Cultured Cells | -- |
