Variant report

Variant	rs17049265
Chromosome Location	chr2:58186913-58186914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10176942	1.00[EUR][1000 genomes]
rs12105064	1.00[EUR][1000 genomes]
rs17049183	1.00[YRI][hapmap]
rs17049208	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17049241	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17049249	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17049267	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17049333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17049337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17049338	1.00[EUR][1000 genomes]
rs17049341	1.00[EUR][1000 genomes]
rs17049342	1.00[EUR][1000 genomes]
rs17049343	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17049344	1.00[EUR][1000 genomes]
rs17049345	1.00[MEX][hapmap]
rs17049350	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17049353	1.00[EUR][1000 genomes]
rs17049354	1.00[EUR][1000 genomes]
rs17049355	1.00[EUR][1000 genomes]
rs17049364	1.00[EUR][1000 genomes]
rs2030236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57559033	1.00[EUR][1000 genomes]
rs58678361	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60226794	1.00[EUR][1000 genomes]
rs60319384	1.00[EUR][1000 genomes]
rs60590670	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60956789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61659380	1.00[EUR][1000 genomes]
rs6739344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72951065	1.00[EUR][1000 genomes]
rs72951066	1.00[EUR][1000 genomes]
rs72951082	1.00[EUR][1000 genomes]
rs72953108	1.00[EUR][1000 genomes]
rs72953132	1.00[EUR][1000 genomes]
rs7566805	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7569184	1.00[EUR][1000 genomes]
rs7587962	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7588018	1.00[EUR][1000 genomes]
rs7601556	1.00[MEX][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv525988	chr2:58161520-58427786	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv874200	chr2:58163178-58262016	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58186600-58187200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:58186800-58187200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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