Variant report

Variant	rs17050030
Chromosome Location	chr2:59484780-59484781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10170742	0.85[CEU][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11125779	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1344457	0.82[ASN][1000 genomes]
rs17050021	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17050029	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17050068	0.90[ASN][1000 genomes]
rs17050074	0.88[ASN][1000 genomes]
rs56790559	0.83[ASN][1000 genomes]
rs6545731	0.82[ASN][1000 genomes]
rs7563298	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59484000-59485800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:59484000-59485800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:59484000-59493600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:59484400-59485600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:59484400-59485600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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