Variant report

Variant	rs17050029
Chromosome Location	chr2:59482272-59482273
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10170742	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11125779	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1344457	0.83[ASN][1000 genomes]
rs17050021	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17050030	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17050068	0.91[ASN][1000 genomes]
rs17050074	0.90[ASN][1000 genomes]
rs17050128	0.90[AMR][1000 genomes]
rs56790559	0.84[ASN][1000 genomes]
rs6545731	0.83[ASN][1000 genomes]
rs72482074	0.80[ASN][1000 genomes]
rs7563298	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59477800-59483400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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