Variant report

Variant	rs72482074
Chromosome Location	chr2:59539450-59539451
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10490114	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1344456	0.82[ASN][1000 genomes]
rs1344457	0.81[ASN][1000 genomes]
rs17050029	0.80[ASN][1000 genomes]
rs17050068	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17050074	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17050128	0.84[ASN][1000 genomes]
rs17050135	0.82[AMR][1000 genomes]
rs56790559	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6545731	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv582099	chr2:59494725-59563744	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1003668	chr2:59523642-59592144	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59535800-59539800	Weak transcription	Fetal Thymus	thymus
2	chr2:59535800-59540200	Weak transcription	Thymus	Thymus
3	chr2:59538800-59540000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:59538800-59540000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:59539000-59541400	Enhancers	Dnd41	blood
6	chr2:59539400-59539800	Weak transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links