Variant report

Variant	rs17050462
Chromosome Location	chr4:121795394-121795395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1588522	0.84[ASW][hapmap]
rs17051237	1.00[MEX][hapmap]
rs17051247	0.84[ASW][hapmap]
rs17051277	0.81[AFR][1000 genomes]
rs343210	0.83[AMR][1000 genomes]
rs72921594	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923505	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923553	0.87[AFR][1000 genomes]
rs72923566	0.87[AFR][1000 genomes]
rs72923567	0.87[AFR][1000 genomes]
rs72923574	0.87[AFR][1000 genomes]
rs72923579	0.81[AFR][1000 genomes]
rs896062	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv4490	chr4:121782939-121801246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121784200-121798000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:121787600-121796000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:121791400-121795800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:121791400-121796000	Weak transcription	NHDF-Ad	bronchial
5	chr4:121791400-121796400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:121791400-121803200	Weak transcription	Fetal Stomach	stomach
7	chr4:121792000-121796000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:121792000-121796000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:121792000-121796000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:121792000-121796000	Weak transcription	Ovary	ovary
11	chr4:121792000-121796000	Weak transcription	Pancreas	Pancrea
12	chr4:121792200-121796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:121792400-121800000	Weak transcription	Aorta	Aorta
14	chr4:121795200-121795400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:121795200-121797400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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