Variant report

Variant	rs896062
Chromosome Location	chr4:121787548-121787549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17050462	0.83[AMR][1000 genomes]
rs3114958	0.87[AFR][1000 genomes]
rs343210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72921594	0.83[AMR][1000 genomes]
rs72923505	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1013704	chr4:121657648-121791601	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv4490	chr4:121782939-121801246	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121766200-121790800	Weak transcription	Ovary	ovary
2	chr4:121775200-121790800	Weak transcription	Fetal Kidney	kidney
3	chr4:121780200-121790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:121784200-121798000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:121784600-121791200	Weak transcription	Pancreas	Pancrea
6	chr4:121786000-121787600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:121786200-121788000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:121786400-121788000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:121786400-121788000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:121786600-121787600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr4:121786600-121787600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:121786600-121787800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:121786600-121788000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:121786600-121788000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:121786600-121788000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:121786600-121788200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:121786600-121788200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:121786800-121787600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr4:121786800-121787600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr4:121787000-121788200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:121787200-121787600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:121787200-121787600	Enhancers	Brain Germinal Matrix	brain
23	chr4:121787200-121787600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr4:121787200-121787600	Enhancers	GM12878-XiMat	blood
25	chr4:121787200-121788000	Enhancers	NHDF-Ad	bronchial
26	chr4:121787200-121791200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:121787400-121787600	Enhancers	Fetal Lung	lung
28	chr4:121787400-121788200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:121787400-121788200	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr4:121787400-121791200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links