Variant report

Variant	rs17052027
Chromosome Location	chrX:154488741-154488742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:154459775..154461316-chrX:154488068..154490192,2	MCF-7	breast:
2	chrX:154488050..154490393-chrX:154494855..154496413,2	K562	blood:
3	chrX:154488693..154491669-chrX:154492165..154494068,3	K562	blood:
4	chrX:154443796..154445946-chrX:154487887..154490068,2	K562	blood:

Variant related genes	Relation type
ENSG00000155961	Chromatin interaction
ENSG00000155959	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1128863	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs12387365	1.00[CEU][hapmap]
rs3599	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5940367	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5940453	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs5987093	1.00[CEU][hapmap];0.87[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916671	chrX:154418093-154560374	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv532966	chrX:154418093-154721378	Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv29972	chrX:154418093-154929412	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv532965	chrX:154418093-155226096	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv532967	chrX:154418093-155252027	Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv534387	chrX:154455491-154560375	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154465600-154490800	Weak transcription	Primary T cells from cord blood	blood
2	chrX:154466400-154492000	Weak transcription	Thymus	Thymus
3	chrX:154466600-154488800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chrX:154467800-154489000	Weak transcription	Dnd41	blood
5	chrX:154467800-154489200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chrX:154468400-154489200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chrX:154468600-154489000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chrX:154484000-154489600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chrX:154484600-154489800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chrX:154485400-154493000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chrX:154486200-154489000	Weak transcription	Primary B cells from peripheral blood	blood
12	chrX:154487000-154492400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chrX:154487000-154492600	Weak transcription	Fetal Thymus	thymus
14	chrX:154487200-154490400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chrX:154487200-154492600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chrX:154487600-154490800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chrX:154487600-154492200	Weak transcription	Brain Anterior Caudate	brain
18	chrX:154488400-154491800	Weak transcription	Primary B cells from cord blood	blood
19	chrX:154488400-154492400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chrX:154488600-154491600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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